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microbiology · environmental science

Microbial sample clusters dendrogram

This dendrogram compares six microbial-community samples. Three soil samples form one highlighted branch and three lake samples form another. The community-distance scale indicates how different the samples were under the selected comparison method, while the cut threshold provides a simple way to discuss the broad clusters.

유형 계통수표준 Newick + NHX extensions엔진 schematex-phylo업데이트됨 2026. 9. 24.
Microbial Sample Clusters
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요청 내용

“Create a microbial sample dendrogram with Soil A, Soil B and Soil C in a Soil samples cluster; Lake A, Lake B and Lake C in a Lake samples cluster; a community-distance scale; and a cut at 2.5.”

그렇다면Add a river sample cluster.Change the cut to 3.
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01Sample labels

Preserve location and replicate information in every leaf label.

02Cluster labels

Label the soil and lake groups so the environmental comparison is immediate.

03Distance scale

State the community distance metric before interpreting the merge heights.

Use this pattern for a small subset of environmental samples when the major grouping is more important than individual abundance values.

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자주 묻는 질문

자주 묻는 질문

What does a microbial sample dendrogram compare?

It compares samples by a selected measure of community similarity or distance. Samples that merge lower are more similar under that measure.

Why label the sample environment?

Environment labels make the biological comparison clear and let readers connect the clusters to the collection design.

Can I add more sampling sites?

Yes, but keep a card-sized diagram focused on the sites needed for the comparison. Use a larger full tree when many samples must be shown.